Variant report

Variant	rs11101269
Chromosome Location	chr10:49445608-49445609
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49438438..49440728-chr10:49443853..49445839,2	K562	blood:
2	chr10:49438433..49440728-chr10:49443022..49446570,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10857549	1.00[CHB][hapmap]
rs10857550	1.00[CHB][hapmap]
rs11101266	1.00[CHB][hapmap]
rs11594677	1.00[CHB][hapmap]
rs12250185	0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12256625	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12257900	1.00[CHB][hapmap]
rs12263780	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs166816	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17697438	1.00[CHB][hapmap]
rs17697510	1.00[CHB][hapmap]
rs17697560	1.00[CHB][hapmap]
rs17697566	1.00[CHB][hapmap]
rs17770069	1.00[CHB][hapmap]
rs1864345	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2047748	1.00[CHB][hapmap]
rs280613	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs280614	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs280616	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4838580	0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4838581	1.00[CHB][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4838582	1.00[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6537556	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67282046	1.00[ASN][1000 genomes]
rs68069145	1.00[ASN][1000 genomes]
rs7067673	1.00[CHB][hapmap]
rs7068878	1.00[CHB][hapmap]
rs733955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs905184	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9651393	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831864	chr10:49299274-49450299	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv895367	chr10:49333754-49491047	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv895370	chr10:49421173-49484698	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49441600-49446800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr10:49442000-49446800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:49442000-49446800	Weak transcription	Brain Angular Gyrus	brain
4	chr10:49442000-49455200	Weak transcription	Right Atrium	heart
5	chr10:49444400-49446800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:49444400-49447000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:49444400-49450600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:49444600-49446800	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:49444800-49446400	Weak transcription	Brain Substantia Nigra	brain
10	chr10:49444800-49446800	Weak transcription	Brain Anterior Caudate	brain
11	chr10:49444800-49447000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:49444800-49448600	Weak transcription	Fetal Thymus	thymus
13	chr10:49444800-49448800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:49445400-49450600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links