Variant report

Variant	rs6537556
Chromosome Location	chr10:49440346-49440347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49438438..49440728-chr10:49443853..49445839,2	K562	blood:
2	chr10:49438433..49440728-chr10:49443022..49446570,3	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10857549	1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs10857550	1.00[CHB][hapmap]
rs11101258	0.92[GIH][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs11101259	0.84[AMR][1000 genomes]
rs11101262	0.84[AMR][1000 genomes]
rs11101263	0.84[AMR][1000 genomes]
rs11101266	1.00[CHB][hapmap]
rs11101269	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11594677	1.00[CHB][hapmap]
rs12249222	0.92[GIH][hapmap];0.92[MEX][hapmap];0.82[AMR][1000 genomes]
rs12250185	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12256625	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12257900	1.00[CHB][hapmap]
rs12263780	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367023	0.92[GIH][hapmap]
rs1367024	0.92[GIH][hapmap]
rs166816	0.88[ASN][1000 genomes]
rs17697168	0.92[GIH][hapmap];0.83[TSI][hapmap]
rs17697186	0.92[GIH][hapmap];0.83[TSI][hapmap]
rs17697438	1.00[CHB][hapmap]
rs17697510	1.00[CHB][hapmap]
rs17697560	1.00[CHB][hapmap]
rs17697566	1.00[CHB][hapmap]
rs17770069	1.00[CHB][hapmap]
rs1864345	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2047748	1.00[CHB][hapmap]
rs280613	1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.88[ASN][1000 genomes]
rs280614	1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.88[ASN][1000 genomes]
rs280616	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs3906617	0.80[AMR][1000 genomes]
rs4491171	0.87[ASW][hapmap];0.92[GIH][hapmap];0.81[LWK][hapmap];0.81[AMR][1000 genomes]
rs4838578	0.92[MEX][hapmap]
rs4838580	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4838581	1.00[CHB][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4838582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67282046	1.00[ASN][1000 genomes]
rs68069145	1.00[ASN][1000 genomes]
rs7067673	1.00[CHB][hapmap]
rs7068878	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs733955	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs745708	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap];1.00[ASN][1000 genomes]
rs7906257	0.84[AMR][1000 genomes]
rs7907898	0.82[AMR][1000 genomes]
rs905184	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs9651393	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831864	chr10:49299274-49450299	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv895367	chr10:49333754-49491047	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv895370	chr10:49421173-49484698	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6537556	MAPK8	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49431600-49441400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:49437800-49440800	Enhancers	Dnd41	blood
3	chr10:49437800-49442000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr10:49439000-49441000	Enhancers	Fetal Thymus	thymus
5	chr10:49440200-49440800	Enhancers	GM12878-XiMat	blood

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