Variant report

Variant	rs11101315
Chromosome Location	chr10:49619766-49619767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49615995..49618408-chr10:49619011..49621814,2	K562	blood:
2	chr10:49613649..49616466-chr10:49619116..49621899,2	K562	blood:
3	chr10:49600536..49602318-chr10:49619238..49621122,2	K562	blood:
4	chr10:49619514..49622153-chr10:49622504..49625064,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1009477	0.85[AMR][1000 genomes]
rs11101291	0.85[AMR][1000 genomes]
rs11101297	0.85[AMR][1000 genomes]
rs11101301	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101303	0.85[AMR][1000 genomes]
rs11101316	0.85[AMR][1000 genomes]
rs12241466	0.85[AMR][1000 genomes]
rs12241476	0.85[AMR][1000 genomes]
rs12244705	0.85[AMR][1000 genomes]
rs12253926	0.85[AMR][1000 genomes]
rs12261653	0.85[AMR][1000 genomes]
rs12265885	0.85[AMR][1000 genomes]
rs12266878	0.85[AMR][1000 genomes]
rs59115521	0.85[AMR][1000 genomes]
rs60051862	0.85[AMR][1000 genomes]
rs7100777	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1039508	chr10:49595718-49654403	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49598600-49619800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:49599200-49622200	Weak transcription	HepG2	liver
3	chr10:49600400-49620200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:49606800-49619800	Weak transcription	Fetal Stomach	stomach
5	chr10:49607600-49624200	Weak transcription	Gastric	stomach
6	chr10:49607600-49624200	Weak transcription	Lung	lung
7	chr10:49607600-49647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:49607600-49652400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:49607800-49620400	Weak transcription	Stomach Mucosa	stomach
10	chr10:49608000-49645600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:49608200-49621000	Weak transcription	Small Intestine	intestine
12	chr10:49608200-49634400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:49608600-49620200	Weak transcription	Right Ventricle	heart
14	chr10:49609000-49620000	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:49609000-49620600	Weak transcription	Hela-S3	cervix
16	chr10:49609200-49620000	Weak transcription	GM12878-XiMat	blood
17	chr10:49609200-49620800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:49609800-49620200	Weak transcription	Brain Angular Gyrus	brain
19	chr10:49609800-49620600	Weak transcription	Brain Substantia Nigra	brain
20	chr10:49611200-49620600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
22	chr10:49612400-49620200	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr10:49612800-49660200	Weak transcription	Aorta	Aorta
24	chr10:49613400-49619800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr10:49614600-49622200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr10:49614600-49623000	Weak transcription	Pancreas	Pancrea
27	chr10:49614800-49620600	Weak transcription	Fetal Heart	heart
28	chr10:49614800-49638400	Weak transcription	HUVEC	blood vessel
29	chr10:49615000-49621200	Weak transcription	NHLF	lung
30	chr10:49615000-49622000	Weak transcription	NHEK	skin
31	chr10:49615000-49622600	Weak transcription	HMEC	breast
32	chr10:49615200-49620000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:49615200-49620000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:49615400-49620600	Weak transcription	HSMMtube	muscle
35	chr10:49615600-49620600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr10:49616000-49621600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr10:49616000-49621800	Strong transcription	Dnd41	blood
38	chr10:49616200-49619800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:49616200-49621400	Strong transcription	Placenta	Placenta
40	chr10:49616400-49619800	Strong transcription	Primary hematopoietic stem cells	blood
41	chr10:49616400-49620800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:49616600-49620200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:49616600-49621600	Strong transcription	Fetal Thymus	thymus
44	chr10:49616800-49619800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:49616800-49620000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:49616800-49620000	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:49616800-49620200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr10:49616800-49620200	Strong transcription	Fetal Lung	lung
49	chr10:49616800-49621600	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr10:49616800-49621800	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links