Variant report

Variant	rs59115521
Chromosome Location	chr10:49610371-49610372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1009477	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101291	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101297	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101301	0.85[AMR][1000 genomes]
rs11101303	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101315	0.85[AMR][1000 genomes]
rs11101316	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101319	0.95[AFR][1000 genomes]
rs12241466	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241476	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261653	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265885	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266878	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60051862	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7070529	0.84[AFR][1000 genomes]
rs7100777	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1039508	chr10:49595718-49654403	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49595000-49616000	Weak transcription	Primary B cells from cord blood	blood
2	chr10:49598600-49619800	Weak transcription	Fetal Intestine Small	intestine
3	chr10:49598800-49612800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:49599200-49622200	Weak transcription	HepG2	liver
5	chr10:49599800-49618000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:49600000-49612400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr10:49600000-49613400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:49600000-49613600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:49600000-49618600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr10:49600200-49612400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr10:49600200-49617400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:49600200-49618200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr10:49600400-49616800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr10:49600400-49620200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:49601200-49613800	Weak transcription	Primary T cells from cord blood	blood
16	chr10:49605200-49618000	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:49606800-49619800	Weak transcription	Fetal Stomach	stomach
18	chr10:49607000-49612400	Weak transcription	Dnd41	blood
19	chr10:49607600-49613800	Weak transcription	Placenta	Placenta
20	chr10:49607600-49614200	Weak transcription	Right Atrium	heart
21	chr10:49607600-49616600	Weak transcription	Fetal Thymus	thymus
22	chr10:49607600-49616800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:49607600-49618000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:49607600-49619400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:49607600-49619600	Weak transcription	Colonic Mucosa	Colon
26	chr10:49607600-49619600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:49607600-49624200	Weak transcription	Gastric	stomach
28	chr10:49607600-49624200	Weak transcription	Lung	lung
29	chr10:49607600-49647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:49607600-49652400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:49607800-49614200	Weak transcription	Fetal Heart	heart
32	chr10:49607800-49614200	Weak transcription	Psoas Muscle	Psoas
33	chr10:49607800-49616800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:49607800-49620400	Weak transcription	Stomach Mucosa	stomach
35	chr10:49608000-49614200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr10:49608000-49614400	Weak transcription	Ovary	ovary
37	chr10:49608000-49645600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr10:49608200-49610600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:49608200-49618000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:49608200-49618200	Weak transcription	Fetal Kidney	kidney
41	chr10:49608200-49619400	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:49608200-49621000	Weak transcription	Small Intestine	intestine
43	chr10:49608200-49634400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr10:49608400-49610800	Enhancers	Brain Germinal Matrix	brain
45	chr10:49608400-49614200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr10:49608400-49618200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr10:49608600-49620200	Weak transcription	Right Ventricle	heart
48	chr10:49608800-49612400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:49608800-49612600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:49608800-49613800	Weak transcription	NH-A	brain

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