Variant report

Variant	rs11101504
Chromosome Location	chr10:50009243-50009244
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:50008960-50009550	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr10:50008972-50009657	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr10:50008933-50009505	MCF10A-Er-Src	breast:	n/a	chr10:50009093-50009102
4	STAT3	chr10:50009165-50009400	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr10:50008974-50009462	MCF10A-Er-Src	breast:	n/a	chr10:50009093-50009102
6	STAT3	chr10:50008909-50009756	MCF10A-Er-Src	breast:	n/a	n/a
7	MYC	chr10:50008964-50009502	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr10:50008949-50009547	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr10:50008916-50009618	MCF10A-Er-Src	breast:	n/a	chr10:50009093-50009102
10	E2F4	chr10:50009061-50009545	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr10:50008960-50009487	MCF10A-Er-Src	breast:	n/a	chr10:50009093-50009102
12	STAT3	chr10:50008909-50009728	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50001268..50003610-chr10:50006671..50009349,2	MCF-7	breast:

Variant related genes	Relation type
WDFY4	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10776644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10776646	1.00[ASN][1000 genomes]
rs10857640	0.83[ASN][1000 genomes]
rs10857642	1.00[ASN][1000 genomes]
rs10857643	1.00[ASN][1000 genomes]
rs10857644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10857646	1.00[ASN][1000 genomes]
rs10857647	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11101468	1.00[CEU][hapmap]
rs11101486	1.00[ASN][1000 genomes]
rs11101491	1.00[ASN][1000 genomes]
rs11101492	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101493	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11101494	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101500	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11101506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12217548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12217755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12220888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12250158	0.83[ASN][1000 genomes]
rs17011183	0.85[JPT][hapmap]
rs1871602	1.00[ASN][1000 genomes]
rs1904599	1.00[CEU][hapmap]
rs41282005	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41282013	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4838650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs55909310	0.94[ASN][1000 genomes]
rs61075731	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50001000-50012800	Weak transcription	Right Ventricle	heart
2	chr10:50001200-50009400	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:50003000-50009400	Weak transcription	Left Ventricle	heart
4	chr10:50004000-50011000	Weak transcription	Lung	lung
5	chr10:50005200-50026800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:50005400-50011000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:50006600-50010400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:50006600-50010800	Genic enhancers	GM12878-XiMat	blood
9	chr10:50007000-50012800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:50007200-50014600	Weak transcription	NHLF	lung
11	chr10:50007200-50017200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:50007600-50013000	Enhancers	Primary T cells fromperipheralblood	blood
13	chr10:50008000-50009600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:50008200-50009600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:50008200-50009600	Enhancers	HUVEC	blood vessel
16	chr10:50008200-50009600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr10:50008200-50009800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:50008200-50009800	Enhancers	Fetal Thymus	thymus
19	chr10:50008200-50010000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr10:50008200-50010400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr10:50008200-50012400	Enhancers	Primary T cells from cord blood	blood
22	chr10:50008200-50012600	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr10:50008200-50013600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:50008200-50015000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr10:50008400-50009400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:50008400-50009600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:50008400-50009600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:50008400-50009600	Enhancers	HMEC	breast
29	chr10:50008400-50009800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr10:50008400-50009800	Enhancers	NHEK	skin
31	chr10:50008400-50010400	Enhancers	Spleen	Spleen
32	chr10:50008400-50013600	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr10:50008600-50009400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:50008600-50009600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:50008600-50013000	Weak transcription	Right Atrium	heart
36	chr10:50008600-50013200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:50008800-50010000	Enhancers	Adipose Nuclei	Adipose
38	chr10:50009000-50009600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr10:50009000-50009800	Enhancers	Primary hematopoietic stem cells	blood
40	chr10:50009000-50010800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr10:50009000-50013600	Genic enhancers	Primary B cells from peripheral blood	blood
42	chr10:50009200-50009400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:50009200-50009400	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr10:50009200-50009400	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr10:50009200-50009400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:50009200-50009400	Enhancers	Duodenum Mucosa	Duodenum
47	chr10:50009200-50009600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:50009200-50009600	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr10:50009200-50009600	Enhancers	Dnd41	blood
50	chr10:50009200-50015200	Genic enhancers	Primary B cells from cord blood	blood

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