Variant report

Variant	rs41282005
Chromosome Location	chr10:49998063-49998064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49995916..49998699-chr10:49999856..50002398,4	K562	blood:
2	chr10:49990440..49992229-chr10:49996377..49998161,2	MCF-7	breast:
3	chr10:49997425..50000920-chr10:50010658..50015147,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10776644	0.83[ASN][1000 genomes]
rs10776646	1.00[ASN][1000 genomes]
rs10857640	0.83[ASN][1000 genomes]
rs10857642	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10857643	1.00[ASN][1000 genomes]
rs10857644	0.95[ASN][1000 genomes]
rs10857646	1.00[ASN][1000 genomes]
rs10857647	1.00[ASN][1000 genomes]
rs11101486	1.00[ASN][1000 genomes]
rs11101491	1.00[ASN][1000 genomes]
rs11101492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101493	1.00[ASN][1000 genomes]
rs11101494	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101495	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101500	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101501	1.00[ASN][1000 genomes]
rs11101504	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101506	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101508	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101509	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12217548	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12217755	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12220888	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12250158	0.83[ASN][1000 genomes]
rs1871602	1.00[ASN][1000 genomes]
rs41282013	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4838650	0.83[ASN][1000 genomes]
rs55909310	0.94[ASN][1000 genomes]
rs61075731	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49967600-50000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:49981400-50007200	Strong transcription	Primary B cells from cord blood	blood
4	chr10:49982400-50000800	Weak transcription	Fetal Thymus	thymus
5	chr10:49982600-50006800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:49985600-49999800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:49990600-49999000	Weak transcription	Lung	lung
8	chr10:49992600-49999800	Weak transcription	Small Intestine	intestine
9	chr10:49992800-50005200	Strong transcription	Primary hematopoietic stem cells	blood
10	chr10:49993400-50002200	Strong transcription	GM12878-XiMat	blood
11	chr10:49993600-50001000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:49993800-50005600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:49995400-50000000	Weak transcription	Colonic Mucosa	Colon
14	chr10:49996200-49999200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:49996200-50000200	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:49996600-49998200	Enhancers	Fetal Lung	lung
17	chr10:49996600-49999200	Genic enhancers	Primary monocytes fromperipheralblood	blood
18	chr10:49996600-50005400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:49997200-49999600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
20	chr10:49997600-50000600	Strong transcription	Spleen	Spleen
21	chr10:49997800-49998200	Enhancers	Fetal Brain Female	brain
22	chr10:49997800-49998200	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
23	chr10:49998000-49998800	Enhancers	Esophagus	oesophagus

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