Variant report

Variant	rs11101506
Chromosome Location	chr10:50012639-50012640
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:50007868..50011089-chr10:50011494..50014036,4	MCF-7	breast:
2	chr10:50011301..50013130-chr10:50016318..50018256,2	MCF-7	breast:
3	chr10:50011536..50013499-chr10:50028535..50030242,2	MCF-7	breast:
4	chr10:50012510..50015290-chr10:50020965..50023375,3	MCF-7	breast:
5	chr10:50012639..50013621-chr10:50022857..50023759,3	MCF-7	breast:
6	chr10:50011032..50014812-chr10:50025927..50027937,3	K562	blood:
7	chr10:50011096..50015039-chr10:50015649..50020097,7	MCF-7	breast:
8	chr10:50012503..50014685-chr10:50027009..50029930,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10776644	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10776646	0.99[ASN][1000 genomes]
rs10857640	0.81[ASN][1000 genomes]
rs10857642	0.99[ASN][1000 genomes]
rs10857643	0.99[ASN][1000 genomes]
rs10857644	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10857646	0.99[ASN][1000 genomes]
rs10857647	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11101467	0.83[JPT][hapmap]
rs11101468	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs11101486	0.99[ASN][1000 genomes]
rs11101491	0.99[ASN][1000 genomes]
rs11101492	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101493	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11101494	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101500	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101501	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11101504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101508	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101509	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12217548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12217755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12220888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs12250158	0.81[ASN][1000 genomes]
rs17011183	0.85[JPT][hapmap]
rs1871602	0.99[ASN][1000 genomes]
rs1904599	1.00[CEU][hapmap]
rs41282005	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41282013	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4838650	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs55909310	0.92[ASN][1000 genomes]
rs61075731	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50001000-50012800	Weak transcription	Right Ventricle	heart
2	chr10:50005200-50026800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:50007000-50012800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:50007200-50014600	Weak transcription	NHLF	lung
5	chr10:50007200-50017200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:50007600-50013000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr10:50008200-50013600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:50008200-50015000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:50008400-50013600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr10:50008600-50013000	Weak transcription	Right Atrium	heart
11	chr10:50008600-50013200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:50009000-50013600	Genic enhancers	Primary B cells from peripheral blood	blood
13	chr10:50009200-50015200	Genic enhancers	Primary B cells from cord blood	blood
14	chr10:50009400-50013200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:50009600-50012800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr10:50009600-50012800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:50009600-50013200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:50009600-50014800	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr10:50009600-50028000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:50009800-50012800	Weak transcription	NHEK	skin
21	chr10:50009800-50013000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:50010000-50012800	Weak transcription	Adipose Nuclei	Adipose
23	chr10:50010800-50014800	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr10:50010800-50016000	Enhancers	Fetal Thymus	thymus
25	chr10:50011000-50014000	Enhancers	Fetal Brain Male	brain
26	chr10:50011000-50014600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:50011200-50013200	Genic enhancers	GM12878-XiMat	blood
28	chr10:50011200-50014800	Enhancers	Brain Germinal Matrix	brain
29	chr10:50011200-50015400	Enhancers	Fetal Muscle Leg	muscle
30	chr10:50011200-50016600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
31	chr10:50011400-50012800	Enhancers	Dnd41	blood
32	chr10:50011400-50016200	Genic enhancers	Primary monocytes fromperipheralblood	blood
33	chr10:50011600-50012800	Weak transcription	Spleen	Spleen
34	chr10:50011600-50013000	Weak transcription	Lung	lung
35	chr10:50011600-50013800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr10:50011600-50016200	Genic enhancers	Monocytes-CD14+_RO01746	blood
37	chr10:50011600-50017000	Enhancers	Fetal Stomach	stomach
38	chr10:50011800-50012800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:50011800-50014600	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr10:50012000-50013200	Enhancers	Brain Hippocampus Middle	brain
41	chr10:50012000-50013200	Enhancers	Thymus	Thymus
42	chr10:50012000-50013600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:50012000-50014800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:50012000-50014800	Enhancers	Fetal Lung	lung
45	chr10:50012200-50013600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr10:50012200-50014200	Enhancers	Brain Cingulate Gyrus	brain
47	chr10:50012200-50014600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:50012400-50013200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr10:50012400-50014600	Flanking Active TSS	Primary T cells from cord blood	blood
50	chr10:50012400-50014600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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