Variant report

Variant	rs11111512
Chromosome Location	chr12:103666272-103666273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11111508	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11111523	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11613843	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12299934	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12306103	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12309101	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12309358	1.00[GIH][hapmap];0.89[TSI][hapmap]
rs12315487	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12317808	1.00[GIH][hapmap];0.84[TSI][hapmap]
rs12320856	0.82[CEU][hapmap];0.89[GIH][hapmap];0.94[TSI][hapmap]
rs1574503	1.00[ASW][hapmap];0.82[CEU][hapmap];0.90[GIH][hapmap];0.94[TSI][hapmap]
rs17033611	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1879620	0.90[GIH][hapmap];0.89[TSI][hapmap]
rs2374244	0.82[CEU][hapmap];0.90[GIH][hapmap];0.94[TSI][hapmap]
rs4077792	0.90[GIH][hapmap];0.84[TSI][hapmap]
rs4764729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975641	chr12:103663103-103667663	Bivalent Enhancer Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11111512	ADAL	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103664200-103667400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr12:103664200-103671000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:103666200-103667800	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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