Variant report

Variant	rs12299934
Chromosome Location	chr12:103638472-103638473
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10507163	0.87[CEU][hapmap]
rs10860987	0.87[CEU][hapmap]
rs11111508	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11111512	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11111542	0.87[CEU][hapmap]
rs12306103	0.81[AMR][1000 genomes]
rs12309101	0.81[AMR][1000 genomes]
rs12309358	0.87[CEU][hapmap]
rs12315487	0.81[AMR][1000 genomes]
rs12315963	0.85[CEU][hapmap]
rs12317808	0.87[CEU][hapmap]
rs1320346	0.87[CEU][hapmap]
rs17033611	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1879620	0.87[CEU][hapmap]
rs4077792	0.87[CEU][hapmap]
rs4764729	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7969944	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832501	chr12:103463927-103648825	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103636200-103639800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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