Variant report

Variant	rs11111683
Chromosome Location	chr12:104018518-104018519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1018034	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10861062	0.93[ASN][1000 genomes]
rs11111682	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1588888	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1826594	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73394090	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052275	chr12:104008918-104044241	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104011600-104020800	Weak transcription	Spleen	Spleen
2	chr12:104016000-104022200	Weak transcription	Right Atrium	heart
3	chr12:104018000-104020400	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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