Variant report

Variant	rs1018034
Chromosome Location	chr12:104023304-104023305
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10861062	0.91[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10861065	0.83[CHB][hapmap]
rs11111682	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11111683	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11111690	0.82[ASN][1000 genomes]
rs1582876	0.86[MEX][hapmap];0.86[MKK][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1588888	1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1677979	0.81[GIH][hapmap]
rs1826594	0.96[ASN][1000 genomes]
rs73394090	0.98[ASN][1000 genomes]
rs7488859	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052275	chr12:104008918-104044241	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1018034	NT5DC3	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104021200-104023600	Enhancers	NHEK	skin
2	chr12:104021400-104025600	Weak transcription	Spleen	Spleen
3	chr12:104022600-104023400	Enhancers	Fetal Muscle Leg	muscle
4	chr12:104023000-104023600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:104023000-104023600	Enhancers	HUVEC	blood vessel
6	chr12:104023200-104023400	Enhancers	Rectal Smooth Muscle	rectum
7	chr12:104023200-104023600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:104023200-104024000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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