Variant report

Variant	rs11111690
Chromosome Location	chr12:104030041-104030042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1018034	0.82[ASN][1000 genomes]
rs10778270	0.86[ASN][1000 genomes]
rs10861062	0.85[ASN][1000 genomes]
rs10861063	0.90[ASN][1000 genomes]
rs10861064	0.90[ASN][1000 genomes]
rs10861065	0.89[ASN][1000 genomes]
rs10861066	0.91[ASN][1000 genomes]
rs10861067	0.91[ASN][1000 genomes]
rs10861068	0.86[ASN][1000 genomes]
rs11111695	0.91[ASN][1000 genomes]
rs11111704	0.86[ASN][1000 genomes]
rs12580493	0.90[ASN][1000 genomes]
rs12829198	0.90[ASN][1000 genomes]
rs1582876	0.90[ASN][1000 genomes]
rs1588888	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1826594	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs56077319	0.91[ASN][1000 genomes]
rs73394090	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7488859	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052275	chr12:104008918-104044241	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv527362	chr12:104029462-104038974	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104023600-104033800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:104027000-104037200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:104029600-104031600	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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