Variant report

Variant	rs11111704
Chromosome Location	chr12:104047682-104047683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10778270	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861063	0.91[ASN][1000 genomes]
rs10861064	0.91[ASN][1000 genomes]
rs10861065	0.90[ASN][1000 genomes]
rs10861066	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10861067	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10861068	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11111690	0.86[ASN][1000 genomes]
rs11111695	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12580493	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12829198	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1582876	0.90[ASN][1000 genomes]
rs56077319	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7488859	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104033200-104062200	Weak transcription	Spleen	Spleen
2	chr12:104044400-104051200	Weak transcription	HSMMtube	muscle
3	chr12:104045800-104049600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr12:104046800-104048200	Weak transcription	Fetal Intestine Small	intestine
5	chr12:104046800-104048600	Enhancers	Fetal Intestine Large	intestine
6	chr12:104047000-104049400	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr12:104047000-104059400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:104047200-104051400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr12:104047600-104048600	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr12:104047600-104051200	Weak transcription	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links