Variant report

Variant	rs10861062
Chromosome Location	chr12:104028211-104028212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1018034	0.91[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10778270	0.83[CHB][hapmap]
rs10861063	0.83[CHB][hapmap]
rs10861065	0.89[CHB][hapmap]
rs10861066	0.83[CHB][hapmap]
rs10861067	0.83[CHB][hapmap]
rs11111682	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11111683	0.93[ASN][1000 genomes]
rs11111690	0.85[ASN][1000 genomes]
rs12829198	0.83[CHB][hapmap]
rs1582876	0.83[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1588888	0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1826594	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73394090	0.98[ASN][1000 genomes]
rs7488859	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052275	chr12:104008918-104044241	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104023600-104033800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:104026600-104028800	Weak transcription	Spleen	Spleen
3	chr12:104027000-104037200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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