Variant report

Variant	rs11116834
Chromosome Location	chr12:85862194-85862195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:85862041..85863123-chr12:86313866..86314895,4	MCF-7	breast:
2	chr12:85861848..85863045-chr12:86266253..86266913,4	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11116817	0.94[AFR][1000 genomes]
rs12297845	0.83[AFR][1000 genomes]
rs12298162	0.83[AFR][1000 genomes]
rs12314092	0.87[AFR][1000 genomes]
rs12315916	0.87[AFR][1000 genomes]
rs7313407	0.87[AFR][1000 genomes]
rs73377161	0.83[AFR][1000 genomes]
rs73377176	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792335	chr12:85321249-86003609	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv817242	chr12:85622245-86069213	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1054573	chr12:85658602-86235433	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1035600	chr12:85661373-86235433	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1053044	chr12:85843030-85942504	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1036617	chr12:85855093-86010549	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:85858600-85862600	Enhancers	HSMM	muscle
2	chr12:85858600-85862600	Enhancers	NHEK	skin
3	chr12:85858600-85863000	Enhancers	HMEC	breast
4	chr12:85859600-85862200	Weak transcription	HSMMtube	muscle
5	chr12:85859800-85862400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:85860000-85862200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr12:85860000-85862400	Weak transcription	Fetal Kidney	kidney
8	chr12:85860200-85862600	Enhancers	Hela-S3	cervix
9	chr12:85861000-85862200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:85861200-85862400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:85861200-85862400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:85861200-85862400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr12:85861200-85862400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr12:85861400-85862400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:85861400-85862400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr12:85861800-85862600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr12:85862000-85862400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr12:85862000-85862400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr12:85862000-85862600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr12:85862000-85862600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:85862000-85862600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr12:85862000-85862600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr12:85862000-85862600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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