Variant report

Variant	rs73377176
Chromosome Location	chr12:85834194-85834195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11116817	1.00[AFR][1000 genomes]
rs11116834	0.94[AFR][1000 genomes]
rs12297845	0.88[AFR][1000 genomes]
rs12298162	0.88[AFR][1000 genomes]
rs12314092	0.82[AFR][1000 genomes]
rs12315916	0.82[AFR][1000 genomes]
rs7313407	0.82[AFR][1000 genomes]
rs73377161	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792335	chr12:85321249-86003609	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv817242	chr12:85622245-86069213	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1054573	chr12:85658602-86235433	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1035600	chr12:85661373-86235433	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:85833000-85836000	Enhancers	Fetal Intestine Large	intestine
2	chr12:85833200-85834600	Enhancers	Stomach Mucosa	stomach
3	chr12:85833200-85836000	Enhancers	Fetal Intestine Small	intestine
4	chr12:85833400-85836200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr12:85833800-85834200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:85833800-85834800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr12:85833800-85834800	Weak transcription	Small Intestine	intestine
8	chr12:85833800-85836000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr12:85833800-85839000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:85833800-85839000	Weak transcription	Colonic Mucosa	Colon
11	chr12:85834000-85834400	Weak transcription	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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