Variant report
| Variant | rs12314092 |
|---|---|
| Chromosome Location | chr12:85873581-85873582 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:85869160..85871446-chr12:85872180..85874528,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11116817 | 0.82[AFR][1000 genomes] |
| rs11116834 | 0.87[AFR][1000 genomes] |
| rs11116886 | 0.88[AFR][1000 genomes] |
| rs12297845 | 0.90[AFR][1000 genomes] |
| rs12298162 | 0.90[AFR][1000 genomes] |
| rs12301445 | 0.88[AFR][1000 genomes] |
| rs12302822 | 0.88[AFR][1000 genomes] |
| rs12307342 | 0.81[AFR][1000 genomes] |
| rs12315916 | 0.95[AFR][1000 genomes] |
| rs12321949 | 0.88[AFR][1000 genomes] |
| rs7313407 | 1.00[AFR][1000 genomes] |
| rs73367240 | 0.88[AFR][1000 genomes] |
| rs73367244 | 0.88[AFR][1000 genomes] |
| rs73367284 | 0.88[AFR][1000 genomes] |
| rs73377161 | 0.90[AFR][1000 genomes] |
| rs73377176 | 0.82[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1792335 | chr12:85321249-86003609 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv817242 | chr12:85622245-86069213 | Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054573 | chr12:85658602-86235433 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 4 | nsv1035600 | chr12:85661373-86235433 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 5 | nsv1053044 | chr12:85843030-85942504 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv1036617 | chr12:85855093-86010549 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:85863000-85874800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
