Variant report

Variant	rs11117777
Chromosome Location	chr1:217325016-217325017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10735492	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10779289	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591042	1.00[ASN][1000 genomes]
rs12094589	0.90[ASN][1000 genomes]
rs12758982	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1354220	0.94[ASN][1000 genomes]
rs1502341	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1502358	0.99[AFR][1000 genomes]
rs1502359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1553346	0.95[ASN][1000 genomes]
rs1553349	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7514342	0.94[ASN][1000 genomes]
rs924654	0.94[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217318400-217325800	Weak transcription	Aorta	Aorta
2	chr1:217323400-217327000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:217324000-217325200	Weak transcription	Fetal Lung	lung
4	chr1:217324600-217326000	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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