Variant report

Variant	rs7514342
Chromosome Location	chr1:217341609-217341610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10735492	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10779289	0.94[ASN][1000 genomes]
rs11117777	0.94[ASN][1000 genomes]
rs11591042	0.94[ASN][1000 genomes]
rs12094589	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12758982	0.85[ASN][1000 genomes]
rs1354220	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1502341	0.93[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs1502359	0.92[ASN][1000 genomes]
rs1553346	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1553349	0.94[ASN][1000 genomes]
rs924654	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549207	chr1:217333272-217455903	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217334000-217342400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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