Variant report

Variant	rs1502341
Chromosome Location	chr1:217311245-217311246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr1:217307066-217313271	NT2-D1	testis:	n/a	n/a
2	SUZ12	chr1:217309428-217313094	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:217308030..217310144-chr1:217311163..217313790,2	MCF-7	breast:

Variant related genes	Relation type
ESRRG	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10735492	0.91[ASN][1000 genomes]
rs10779289	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11117777	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11591042	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12094589	0.87[ASN][1000 genomes]
rs12758982	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1354220	0.91[ASN][1000 genomes]
rs1502359	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1553346	0.92[ASN][1000 genomes]
rs1553349	0.97[ASN][1000 genomes]
rs7514342	0.91[ASN][1000 genomes]
rs924654	0.91[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217307200-217311600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr1:217307200-217314200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr1:217307200-217314200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr1:217307400-217314200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
5	chr1:217307600-217311800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr1:217309200-217311800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:217309600-217311400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:217309600-217311400	Bivalent Enhancer	Lung	lung
9	chr1:217309800-217311800	Bivalent Enhancer	Fetal Lung	lung
10	chr1:217309800-217312600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:217309800-217313800	Bivalent Enhancer	Fetal Brain Male	brain
12	chr1:217310000-217313000	Weak transcription	Right Atrium	heart
13	chr1:217310200-217311600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr1:217310400-217311800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr1:217310600-217311400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
16	chr1:217310600-217311600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:217310600-217312000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr1:217310600-217312000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:217310800-217311600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
20	chr1:217310800-217311600	Weak transcription	Gastric	stomach
21	chr1:217310800-217311800	Bivalent Enhancer	Ovary	ovary
22	chr1:217311000-217311600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:217311000-217311600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr1:217311000-217311600	Bivalent/Poised TSS	Fetal Brain Female	brain
25	chr1:217311000-217311800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:217311000-217311800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
27	chr1:217311000-217311800	Enhancers	Pancreas	Pancrea
28	chr1:217311000-217311800	Bivalent Enhancer	Spleen	Spleen
29	chr1:217311000-217312000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
30	chr1:217311000-217312000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
31	chr1:217311000-217312200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr1:217311200-217311400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:217311200-217311400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:217311200-217311400	Bivalent Enhancer	Brain Germinal Matrix	brain
35	chr1:217311200-217311600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:217311200-217311600	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
37	chr1:217311200-217311600	Bivalent Enhancer	Fetal Intestine Large	intestine
38	chr1:217311200-217311600	Bivalent Enhancer	Fetal Muscle Leg	muscle
39	chr1:217311200-217311600	Bivalent Enhancer	Fetal Stomach	stomach
40	chr1:217311200-217311800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr1:217311200-217311800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
42	chr1:217311200-217312000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:217311200-217312000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
44	chr1:217311200-217312200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
45	chr1:217311200-217313000	Weak transcription	Right Ventricle	heart

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