Variant report

Variant	rs11118554
Chromosome Location	chr1:220602043-220602044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11576868	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11582548	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1361256	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1933881	0.88[AFR][1000 genomes]
rs6686532	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7512221	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220598800-220603400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:220599800-220603200	Weak transcription	Placenta	Placenta
3	chr1:220600800-220603200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:220600800-220603400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:220601000-220603200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:220601000-220603400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:220601000-220603400	Weak transcription	HMEC	breast
8	chr1:220601000-220604800	Weak transcription	Adipose Nuclei	Adipose
9	chr1:220601200-220603400	Weak transcription	NHEK	skin
10	chr1:220601400-220602400	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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