Variant report
| Variant | rs1111912 |
|---|---|
| Chromosome Location | chr8:103165042-103165043 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr8:103164607-103165138 | MCF-7 | breast: | n/a | n/a |
| 2 | RAD21 | chr8:103164551-103165097 | HCT-116 | colon: | n/a | n/a |
| 3 | CTCF | chr8:103164577-103165087 | MCF-7 | breast: | n/a | n/a |
| 4 | CBX3 | chr8:103164598-103165055 | HCT-116 | colon: | n/a | n/a |
| 5 | CTCF | chr8:103164590-103165092 | MCF-7 | breast: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254492 | TF binding region |
| ENSG00000254492 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs10103532 | 0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1148518 | 0.83[ASN][1000 genomes] |
| rs13260703 | 0.89[ASN][1000 genomes] |
| rs2051274 | 0.82[CEU][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap] |
| rs35246071 | 0.85[ASN][1000 genomes] |
| rs6468815 | 0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6989827 | 0.89[CEU][hapmap];0.85[CHB][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7822831 | 0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9297318 | 0.92[CEU][hapmap];0.85[CHB][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754264 | chr8:103070824-103170824 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1020359 | chr8:103109921-103318415 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 3 | nsv1033829 | chr8:103110057-103525696 | Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 4 | nsv1021459 | chr8:103163436-103401754 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| 5 | nsv539701 | chr8:103163436-103401754 | Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:103163600-103165200 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
