Variant report

Variant	rs11119216
Chromosome Location	chr1:209269715-209269716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10863762	1.00[EUR][1000 genomes]
rs11119241	1.00[EUR][1000 genomes]
rs12093615	1.00[EUR][1000 genomes]
rs1320542	1.00[EUR][1000 genomes]
rs1933599	1.00[EUR][1000 genomes]
rs1933605	1.00[EUR][1000 genomes]
rs1933609	1.00[EUR][1000 genomes]
rs1933615	1.00[EUR][1000 genomes]
rs1933617	1.00[EUR][1000 genomes]
rs1933618	1.00[EUR][1000 genomes]
rs1953754	1.00[EUR][1000 genomes]
rs2095766	1.00[EUR][1000 genomes]
rs2105164	1.00[EUR][1000 genomes]
rs2185096	1.00[EUR][1000 genomes]
rs2788169	1.00[EUR][1000 genomes]
rs2788171	1.00[EUR][1000 genomes]
rs4240830	1.00[EUR][1000 genomes]
rs4844773	1.00[EUR][1000 genomes]
rs4844777	1.00[EUR][1000 genomes]
rs4844778	1.00[EUR][1000 genomes]
rs4844788	1.00[EUR][1000 genomes]
rs6665600	1.00[EUR][1000 genomes]
rs6668118	1.00[EUR][1000 genomes]
rs6681778	1.00[EUR][1000 genomes]
rs6681976	1.00[EUR][1000 genomes]
rs6682089	1.00[EUR][1000 genomes]
rs7529040	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006716	chr1:209261652-209285782	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209266400-209271200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:209267800-209270600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:209268000-209270000	Enhancers	Liver	Liver
4	chr1:209268200-209270200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:209269000-209270200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:209269000-209270200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:209269000-209270200	Enhancers	HMEC	breast
8	chr1:209269000-209270400	Enhancers	NHEK	skin
9	chr1:209269000-209270600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:209269000-209270600	Enhancers	HSMM	muscle
11	chr1:209269000-209271600	Enhancers	HSMMtube	muscle
12	chr1:209269200-209269800	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr1:209269200-209269800	Enhancers	NHDF-Ad	bronchial
14	chr1:209269200-209270000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:209269200-209270000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:209269200-209270000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:209269200-209270000	Enhancers	Hela-S3	cervix
18	chr1:209269200-209270000	Enhancers	Osteobl	bone
19	chr1:209269200-209270200	Enhancers	NH-A	brain
20	chr1:209269400-209270000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:209269400-209270000	Enhancers	GM12878-XiMat	blood
22	chr1:209269400-209273800	Weak transcription	Fetal Brain Male	brain
23	chr1:209269600-209270000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:209269600-209270000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:209269600-209270000	Enhancers	A549	lung

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