Variant report

Variant	rs2788171
Chromosome Location	chr1:209369578-209369579
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209368320..209369917-chr1:209372141..209373660,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10863762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119216	1.00[EUR][1000 genomes]
rs11119241	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093615	1.00[EUR][1000 genomes]
rs1320542	1.00[EUR][1000 genomes]
rs1933599	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1933605	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1933609	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1933615	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1933617	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1933618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1953754	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2039177	1.00[AMR][1000 genomes]
rs2095766	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2105164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2185096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2211046	1.00[AMR][1000 genomes]
rs2250698	1.00[AMR][1000 genomes]
rs2788157	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2788169	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2800917	1.00[AMR][1000 genomes]
rs2800918	1.00[AMR][1000 genomes]
rs2843177	1.00[AMR][1000 genomes]
rs4240830	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4844773	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4844777	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4844778	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4844788	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6665600	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6668118	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6681778	1.00[EUR][1000 genomes]
rs6681976	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682089	1.00[EUR][1000 genomes]
rs7529040	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs985777	1.00[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209368200-209369800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
2	chr1:209368200-209370800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
3	chr1:209368200-209370800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr1:209368200-209371400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:209368400-209370000	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr1:209368400-209370200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr1:209369200-209369600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr1:209369200-209370400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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