Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:209400144..209402804-chr1:209588450..209590048,2	MCF-7	breast:
2	chr1:209393306..209397796-chr1:209399926..209403415,4	MCF-7	breast:
3	chr1:209401346..209403763-chr1:209407691..209409973,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10863762	1.00[AMR][1000 genomes]
rs11119241	1.00[AMR][1000 genomes]
rs1933599	1.00[AMR][1000 genomes]
rs1933605	1.00[AMR][1000 genomes]
rs1933609	1.00[AMR][1000 genomes]
rs1933615	1.00[AMR][1000 genomes]
rs1933617	1.00[AMR][1000 genomes]
rs1933618	1.00[AMR][1000 genomes]
rs1953754	1.00[AMR][1000 genomes]
rs2039177	1.00[AMR][1000 genomes]
rs2095766	1.00[AMR][1000 genomes]
rs2105164	1.00[AMR][1000 genomes]
rs2185096	1.00[AMR][1000 genomes]
rs2211046	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2250698	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2788157	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2788169	1.00[AMR][1000 genomes]
rs2788171	1.00[AMR][1000 genomes]
rs2800917	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2800918	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4240830	1.00[AMR][1000 genomes]
rs4844773	1.00[AMR][1000 genomes]
rs4844777	1.00[AMR][1000 genomes]
rs4844778	1.00[AMR][1000 genomes]
rs4844788	1.00[AMR][1000 genomes]
rs6665600	1.00[AMR][1000 genomes]
rs6668118	1.00[AMR][1000 genomes]
rs6681976	1.00[AMR][1000 genomes]
rs7529040	1.00[AMR][1000 genomes]
rs985777	0.82[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209398600-209402200	Weak transcription	NHEK	skin
2	chr1:209398600-209402600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:209400000-209402600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:209400200-209401800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:209400200-209402200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:209400400-209401800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:209400400-209402200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:209400600-209401800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:209400800-209401800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr1:209400800-209402200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:209400800-209404800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:209401200-209401800	Enhancers	HMEC	breast
13	chr1:209401400-209403600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:209401600-209402800	Weak transcription	Fetal Brain Male	brain

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