Variant report

Variant	rs2039177
Chromosome Location	chr1:209262504-209262505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10863762	1.00[AMR][1000 genomes]
rs11119241	1.00[AMR][1000 genomes]
rs1933599	1.00[AMR][1000 genomes]
rs1933605	1.00[AMR][1000 genomes]
rs1933609	1.00[AMR][1000 genomes]
rs1933615	1.00[AMR][1000 genomes]
rs1933617	1.00[AMR][1000 genomes]
rs1933618	1.00[AMR][1000 genomes]
rs1953754	1.00[AMR][1000 genomes]
rs2095766	1.00[AMR][1000 genomes]
rs2105164	1.00[AMR][1000 genomes]
rs2185096	1.00[AMR][1000 genomes]
rs2211046	1.00[AMR][1000 genomes]
rs2250698	1.00[AMR][1000 genomes]
rs2788157	1.00[AMR][1000 genomes]
rs2788169	1.00[AMR][1000 genomes]
rs2788171	1.00[AMR][1000 genomes]
rs2800917	1.00[AMR][1000 genomes]
rs2800918	1.00[AMR][1000 genomes]
rs2843177	1.00[AMR][1000 genomes]
rs4240830	1.00[AMR][1000 genomes]
rs4844773	1.00[AMR][1000 genomes]
rs4844777	1.00[AMR][1000 genomes]
rs4844778	1.00[AMR][1000 genomes]
rs4844788	1.00[AMR][1000 genomes]
rs6665600	1.00[AMR][1000 genomes]
rs6668118	1.00[AMR][1000 genomes]
rs6681976	1.00[AMR][1000 genomes]
rs7529040	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006716	chr1:209261652-209285782	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209260400-209269000	Weak transcription	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links