Variant report

Variant	rs11119442
Chromosome Location	chr1:210388963-210388964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210386045..210390022-chr1:210405136..210408091,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203706	Chromatin interaction
ENSG00000082497	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10489346	1.00[AFR][1000 genomes]
rs10779520	1.00[AFR][1000 genomes]
rs10779521	1.00[AFR][1000 genomes]
rs10863806	1.00[AFR][1000 genomes]
rs10863809	1.00[AFR][1000 genomes]
rs10863814	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119388	1.00[AFR][1000 genomes]
rs11119391	1.00[AFR][1000 genomes]
rs11119394	1.00[AFR][1000 genomes]
rs11119398	1.00[AFR][1000 genomes]
rs11119417	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11119433	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11119434	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11119445	1.00[EUR][1000 genomes]
rs12057832	1.00[AFR][1000 genomes]
rs12059828	1.00[AFR][1000 genomes]
rs12061641	1.00[AFR][1000 genomes]
rs12062530	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12065575	1.00[AFR][1000 genomes]
rs12066358	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12067807	1.00[AFR][1000 genomes]
rs12073617	1.00[AFR][1000 genomes]
rs12079916	0.82[AMR][1000 genomes]
rs12083219	1.00[AFR][1000 genomes]
rs12088422	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12089327	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12089449	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12092527	0.83[AMR][1000 genomes]
rs12094309	1.00[AFR][1000 genomes]
rs12401574	1.00[AFR][1000 genomes]
rs12403002	1.00[AFR][1000 genomes]
rs12403098	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12406136	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12408689	0.82[AMR][1000 genomes]
rs12409047	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12409060	1.00[AFR][1000 genomes]
rs12565072	1.00[AFR][1000 genomes]
rs12566105	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12566314	1.00[AFR][1000 genomes]
rs12569033	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1338297	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1387932	1.00[AFR][1000 genomes]
rs17015564	1.00[AFR][1000 genomes]
rs17015565	1.00[AFR][1000 genomes]
rs17015566	1.00[AFR][1000 genomes]
rs17015667	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2130625	1.00[AFR][1000 genomes]
rs2130629	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28417505	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4589111	1.00[AFR][1000 genomes]
rs4844507	1.00[AFR][1000 genomes]
rs4844509	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4844935	1.00[AFR][1000 genomes]
rs4844936	1.00[AFR][1000 genomes]
rs4844937	1.00[AFR][1000 genomes]
rs4844939	1.00[AFR][1000 genomes]
rs4844941	1.00[AFR][1000 genomes]
rs4844943	1.00[AFR][1000 genomes]
rs4844944	1.00[AFR][1000 genomes]
rs4844945	1.00[AFR][1000 genomes]
rs4844946	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4844955	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72649937	1.00[AFR][1000 genomes]
rs72649938	1.00[AFR][1000 genomes]
rs72649940	1.00[AFR][1000 genomes]
rs72649948	1.00[AFR][1000 genomes]
rs72649949	1.00[AFR][1000 genomes]
rs72649955	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72649956	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72649959	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72649960	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72649961	0.86[EUR][1000 genomes]
rs72649963	0.86[EUR][1000 genomes]
rs72649964	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649965	0.86[EUR][1000 genomes]
rs72649967	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649968	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649969	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7416285	1.00[AFR][1000 genomes]
rs760768	1.00[AFR][1000 genomes]
rs9787400	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210387000-210389800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:210388200-210389000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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