Variant report

Variant	rs12062530
Chromosome Location	chr1:210382283-210382284
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210381723..210383742-chr1:210389217..210391260,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10779521	0.81[AMR][1000 genomes]
rs10863809	0.81[AMR][1000 genomes]
rs10863814	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11119403	0.81[AMR][1000 genomes]
rs11119417	0.85[AMR][1000 genomes]
rs11119433	0.89[AMR][1000 genomes]
rs11119434	0.92[AMR][1000 genomes]
rs11119442	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119445	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12059828	0.81[AMR][1000 genomes]
rs12061641	0.81[AMR][1000 genomes]
rs12066358	0.85[AMR][1000 genomes]
rs12073617	0.81[AMR][1000 genomes]
rs12079916	0.84[AMR][1000 genomes]
rs12088422	0.90[AMR][1000 genomes]
rs12089327	0.85[AMR][1000 genomes]
rs12089449	0.84[AMR][1000 genomes]
rs12092527	0.85[AMR][1000 genomes]
rs12403098	0.84[AMR][1000 genomes]
rs12406136	0.89[AMR][1000 genomes]
rs12408689	0.84[AMR][1000 genomes]
rs12409047	0.85[AMR][1000 genomes]
rs12409069	0.81[AMR][1000 genomes]
rs12566105	0.87[AMR][1000 genomes]
rs12569033	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1338297	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1387932	0.81[AMR][1000 genomes]
rs17015564	0.81[AMR][1000 genomes]
rs17015565	0.81[AMR][1000 genomes]
rs17015566	0.81[AMR][1000 genomes]
rs17015667	0.87[AMR][1000 genomes]
rs2130629	0.85[AMR][1000 genomes]
rs28417505	0.85[AMR][1000 genomes]
rs4844509	0.87[AMR][1000 genomes]
rs4844943	0.81[AMR][1000 genomes]
rs4844944	0.81[AMR][1000 genomes]
rs4844946	0.84[AMR][1000 genomes]
rs4844955	0.90[AMR][1000 genomes]
rs67726741	0.86[ASN][1000 genomes]
rs72649948	0.81[AMR][1000 genomes]
rs72649949	0.81[AMR][1000 genomes]
rs72649955	0.85[AMR][1000 genomes]
rs72649956	0.90[AMR][1000 genomes]
rs72649959	0.90[AMR][1000 genomes]
rs72649960	0.90[AMR][1000 genomes]
rs72649961	0.86[EUR][1000 genomes]
rs72649963	0.86[EUR][1000 genomes]
rs72649964	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72649965	0.86[EUR][1000 genomes]
rs72649967	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72649968	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72649969	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9787400	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv526050	chr1:210381257-210386585	Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210381800-210382600	Active TSS	iPS-15b Cell Line	embryonic stem cell

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