Variant report

Variant	rs72649965
Chromosome Location	chr1:210372065-210372066
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210372005..210373538-chr1:210545474..210547573,2	MCF-7	breast:
2	chr1:210369104..210372141-chr1:210373881..210375833,3	K562	blood:
3	chr1:210325776..210327763-chr1:210371201..210372948,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10863814	0.86[EUR][1000 genomes]
rs11119442	0.86[EUR][1000 genomes]
rs11119445	0.86[EUR][1000 genomes]
rs12062530	0.86[EUR][1000 genomes]
rs12561877	1.00[AMR][1000 genomes]
rs12562421	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12565234	1.00[AMR][1000 genomes]
rs12567184	1.00[AMR][1000 genomes]
rs12567185	1.00[AMR][1000 genomes]
rs12569033	0.86[EUR][1000 genomes]
rs1338297	0.86[EUR][1000 genomes]
rs4144930	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72649927	1.00[AMR][1000 genomes]
rs72649928	1.00[AMR][1000 genomes]
rs72649929	1.00[AMR][1000 genomes]
rs72649930	1.00[AMR][1000 genomes]
rs72649931	1.00[AMR][1000 genomes]
rs72649932	1.00[AMR][1000 genomes]
rs72649933	1.00[AMR][1000 genomes]
rs72649934	1.00[AMR][1000 genomes]
rs72649935	1.00[AMR][1000 genomes]
rs72649936	1.00[AMR][1000 genomes]
rs72649939	1.00[AMR][1000 genomes]
rs72649941	1.00[AMR][1000 genomes]
rs72649942	1.00[AMR][1000 genomes]
rs72649943	1.00[AMR][1000 genomes]
rs72649944	1.00[AMR][1000 genomes]
rs72649945	1.00[AMR][1000 genomes]
rs72649946	1.00[AMR][1000 genomes]
rs72649947	1.00[AMR][1000 genomes]
rs72649950	1.00[AMR][1000 genomes]
rs72649951	1.00[AMR][1000 genomes]
rs72649953	1.00[AMR][1000 genomes]
rs72649954	1.00[AMR][1000 genomes]
rs72649958	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72649961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72649963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72649964	0.86[EUR][1000 genomes]
rs72649967	0.86[EUR][1000 genomes]
rs72649968	0.86[EUR][1000 genomes]
rs72649970	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72649971	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72649972	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72649974	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210369400-210375400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:210371800-210372600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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