Variant report

Variant	rs11119576
Chromosome Location	chr1:210880925-210880926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1112999	1.00[CHB][hapmap]
rs12064860	0.82[YRI][hapmap]
rs12069077	0.82[YRI][hapmap]
rs12097849	0.82[YRI][hapmap]
rs12759150	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1340125	1.00[CHB][hapmap]
rs17016666	1.00[ASN][1000 genomes]
rs17016712	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188665	1.00[CHB][hapmap]
rs3905343	1.00[CHB][hapmap]
rs6695591	1.00[CHB][hapmap]
rs74156022	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7552646	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210846400-210884600	Weak transcription	Ovary	ovary
2	chr1:210857200-210882600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:210864400-210889800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:210866800-210884800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:210869800-210882600	Weak transcription	Brain Anterior Caudate	brain
6	chr1:210871200-210932000	Weak transcription	HSMM	muscle
7	chr1:210874200-210887400	Weak transcription	HSMMtube	muscle
8	chr1:210876200-210881200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:210877200-210888400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:210878600-210883600	Weak transcription	Fetal Stomach	stomach
11	chr1:210879000-210881600	Enhancers	Liver	Liver
12	chr1:210879400-210881800	Enhancers	A549	lung
13	chr1:210879400-210882200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:210879600-210884200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:210880000-210882200	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr1:210880200-210881400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr1:210880200-210881600	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr1:210880400-210881600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:210880400-210881600	Enhancers	Gastric	stomach
20	chr1:210880400-210881600	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr1:210880600-210881000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr1:210880600-210881000	Enhancers	Pancreas	Pancrea
23	chr1:210880600-210881800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:210880600-210881800	Enhancers	Brain Angular Gyrus	brain

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