Variant report

Variant	rs12069077
Chromosome Location	chr1:210838533-210838534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11119563	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119576	0.82[YRI][hapmap]
rs12057501	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058991	0.88[AFR][1000 genomes]
rs12064860	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12074032	1.00[ASN][1000 genomes]
rs12092331	0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs12097849	0.82[YRI][hapmap]
rs12401748	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12402386	0.84[EUR][1000 genomes]
rs12402746	1.00[ASN][1000 genomes]
rs12408013	0.87[EUR][1000 genomes]
rs12409881	0.95[EUR][1000 genomes]
rs17260669	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17260718	1.00[ASN][1000 genomes]
rs1934617	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1934619	1.00[ASN][1000 genomes]
rs4468233	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57402964	0.88[AFR][1000 genomes]
rs58495788	0.88[AFR][1000 genomes]
rs61829483	1.00[ASN][1000 genomes]
rs61829485	1.00[ASN][1000 genomes]
rs74156005	0.88[AFR][1000 genomes]
rs74156006	0.88[AFR][1000 genomes]
rs74156007	0.88[AFR][1000 genomes]
rs74156008	0.88[AFR][1000 genomes]
rs74156018	0.85[AFR][1000 genomes]
rs74158964	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
3	esv1825229	chr1:210789477-210854976	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv873151	chr1:210818347-210846888	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv873152	chr1:210820285-210854815	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210827600-210843400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:210827600-210847600	Weak transcription	HSMM	muscle
3	chr1:210829000-210853400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:210835400-210863200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:210837200-210845000	Weak transcription	Fetal Stomach	stomach
6	chr1:210837400-210838600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:210837800-210847600	Weak transcription	Pancreas	Pancrea
8	chr1:210837800-210854200	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:210837800-210859800	Weak transcription	Right Ventricle	heart
10	chr1:210838000-210843600	Weak transcription	HSMMtube	muscle
11	chr1:210838000-210880400	Weak transcription	Gastric	stomach
12	chr1:210838200-210848200	Weak transcription	Left Ventricle	heart
13	chr1:210838400-210838600	Flanking Active TSS	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links