Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10494929	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11119563	1.00[ASN][1000 genomes]
rs12057501	1.00[ASN][1000 genomes]
rs12069077	1.00[ASN][1000 genomes]
rs12074032	1.00[ASN][1000 genomes]
rs12401748	1.00[ASN][1000 genomes]
rs12402746	1.00[ASN][1000 genomes]
rs12404442	0.82[EUR][1000 genomes]
rs17188548	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17188562	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17188576	0.82[AMR][1000 genomes]
rs17188617	0.81[EUR][1000 genomes]
rs17188623	0.81[EUR][1000 genomes]
rs17260669	1.00[ASN][1000 genomes]
rs17260718	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17260725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17260816	0.81[EUR][1000 genomes]
rs1934611	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1934617	1.00[ASN][1000 genomes]
rs1934619	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4468233	1.00[ASN][1000 genomes]
rs56102016	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61829485	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61829488	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61829491	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61829494	0.82[EUR][1000 genomes]
rs6691880	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7532804	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7535110	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210901600-210908200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:210902400-210907600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:210903800-210919200	Weak transcription	HSMMtube	muscle
5	chr1:210904200-210905400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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