Variant report

Variant	rs7532804
Chromosome Location	chr1:210923104-210923105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10494929	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1123489	0.80[EUR][1000 genomes]
rs12404442	0.83[EUR][1000 genomes]
rs17188548	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17188562	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17188576	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17188617	0.83[EUR][1000 genomes]
rs17188623	0.83[EUR][1000 genomes]
rs17260718	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17260725	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17260781	0.82[EUR][1000 genomes]
rs17260795	0.81[EUR][1000 genomes]
rs17260816	0.83[EUR][1000 genomes]
rs17260837	0.80[EUR][1000 genomes]
rs1934611	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1934619	0.81[EUR][1000 genomes]
rs56102016	0.85[AMR][1000 genomes]
rs61827576	0.80[EUR][1000 genomes]
rs61829483	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61829485	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61829488	0.85[EUR][1000 genomes]
rs61829491	0.85[EUR][1000 genomes]
rs61829494	0.83[EUR][1000 genomes]
rs6691880	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7535110	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210917400-210930800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:210919800-210928600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:210920800-210923400	Weak transcription	HSMMtube	muscle
5	chr1:210920800-210928200	Weak transcription	Esophagus	oesophagus
6	chr1:210921600-210931400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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