Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10494929	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11119563	1.00[ASN][1000 genomes]
rs12057501	1.00[ASN][1000 genomes]
rs12069077	1.00[ASN][1000 genomes]
rs12074032	1.00[ASN][1000 genomes]
rs12401748	1.00[ASN][1000 genomes]
rs12402746	1.00[ASN][1000 genomes]
rs17188548	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17188562	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17260669	1.00[ASN][1000 genomes]
rs17260718	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17260725	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17260781	1.00[GIH][hapmap]
rs1934611	0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1934617	1.00[ASN][1000 genomes]
rs4468233	1.00[ASN][1000 genomes]
rs56102016	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61829483	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61829485	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61829488	0.84[EUR][1000 genomes]
rs61829491	0.83[EUR][1000 genomes]
rs6691880	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7532804	0.81[EUR][1000 genomes]
rs7535110	0.94[CEU][hapmap];0.84[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1934619	KCNH1	cis	parietal	SCAN
rs1934619	CR2	cis	cerebellum	SCAN
rs1934619	DTL	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210881800-210901200	Weak transcription	Brain Angular Gyrus	brain
3	chr1:210889200-210903200	Weak transcription	HSMMtube	muscle
4	chr1:210895200-210897400	Enhancers	Pancreas	Pancrea
5	chr1:210896400-210897800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr1:210896600-210897000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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