Variant report

Variant	rs61829485
Chromosome Location	chr1:210915548-210915549
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210913946..210916328-chr1:210919386..210921041,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10494929	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11119563	1.00[ASN][1000 genomes]
rs1112999	0.83[AFR][1000 genomes]
rs1123489	0.83[AMR][1000 genomes]
rs12057501	1.00[ASN][1000 genomes]
rs12069077	1.00[ASN][1000 genomes]
rs12074032	1.00[ASN][1000 genomes]
rs12401748	1.00[ASN][1000 genomes]
rs12402746	1.00[ASN][1000 genomes]
rs12404442	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12406602	1.00[AFR][1000 genomes]
rs1418972	1.00[AFR][1000 genomes]
rs1539532	1.00[AFR][1000 genomes]
rs17188548	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17188562	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17188576	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17188617	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17188623	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17260669	1.00[ASN][1000 genomes]
rs17260718	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17260725	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17260781	0.83[AMR][1000 genomes]
rs17260795	0.83[AMR][1000 genomes]
rs17260816	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17260830	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17260837	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1934611	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1934617	1.00[ASN][1000 genomes]
rs1934619	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3905343	0.83[AFR][1000 genomes]
rs4468233	1.00[ASN][1000 genomes]
rs56102016	0.92[AMR][1000 genomes]
rs61827576	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61827577	1.00[AFR][1000 genomes]
rs61827580	1.00[AFR][1000 genomes]
rs61827581	1.00[AFR][1000 genomes]
rs61829483	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61829488	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61829491	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61829494	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6691880	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7532804	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7535110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210903800-210919200	Weak transcription	HSMMtube	muscle
3	chr1:210905600-210921200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:210910600-210921200	Weak transcription	Brain Angular Gyrus	brain

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