Variant report

Variant	rs1112999
Chromosome Location	chr1:211021912-211021913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10494929	0.83[AFR][1000 genomes]
rs11119576	1.00[CHB][hapmap]
rs1112600	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12401745	1.00[ASN][1000 genomes]
rs12404442	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12406602	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12759150	1.00[CHB][hapmap]
rs1340125	1.00[CHB][hapmap]
rs1418972	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1539532	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17188548	0.83[AFR][1000 genomes]
rs17188562	0.83[AFR][1000 genomes]
rs17188576	0.83[AFR][1000 genomes]
rs17188617	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17188623	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17188665	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17260725	0.83[AFR][1000 genomes]
rs17260816	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17260830	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17260837	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1934611	0.83[AFR][1000 genomes]
rs3905343	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55717804	0.82[EUR][1000 genomes]
rs61827576	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61827577	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61827580	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61827581	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61829485	0.83[AFR][1000 genomes]
rs61829488	0.83[AFR][1000 genomes]
rs61829491	0.83[AFR][1000 genomes]
rs61829494	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61848965	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61848966	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61848967	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848972	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658648	1.00[ASN][1000 genomes]
rs6658652	1.00[ASN][1000 genomes]
rs6660844	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691880	0.83[AFR][1000 genomes]
rs6695591	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72755509	1.00[ASN][1000 genomes]
rs7520827	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523746	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7535110	0.83[AFR][1000 genomes]
rs7552646	1.00[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv520509	chr1:211021787-211041590	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211016400-211024200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:211016600-211023400	Weak transcription	Brain Anterior Caudate	brain
3	chr1:211021200-211022000	Strong transcription	HSMM	muscle

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