Variant report

Variant	rs61848965
Chromosome Location	chr1:211035446-211035447
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211034100..211037099-chr11:9405144..9407454,2	MCF-7	breast:
2	chr1:211034097..211035602-chr11:9405126..9407786,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205339	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1112600	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1112999	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12401745	0.83[ASN][1000 genomes]
rs12406602	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1539532	0.80[AMR][1000 genomes]
rs17188665	0.83[ASN][1000 genomes]
rs17260837	0.82[AMR][1000 genomes]
rs3905343	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55717804	0.92[EUR][1000 genomes]
rs61827576	0.82[AMR][1000 genomes]
rs61827577	0.82[AMR][1000 genomes]
rs61827580	0.82[AMR][1000 genomes]
rs61827581	0.82[AMR][1000 genomes]
rs61848966	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848967	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61848972	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6658648	0.83[ASN][1000 genomes]
rs6658652	0.83[ASN][1000 genomes]
rs6660844	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6695591	0.83[ASN][1000 genomes]
rs72755509	0.83[ASN][1000 genomes]
rs7520827	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7523746	0.80[AMR][1000 genomes]
rs7552646	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv520509	chr1:211021787-211041590	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv4398	chr1:211034582-211079117	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211024800-211046800	Weak transcription	HSMMtube	muscle
2	chr1:211035400-211035600	Active TSS	Brain Anterior Caudate	brain
3	chr1:211035400-211035600	Active TSS	Esophagus	oesophagus
4	chr1:211035400-211035800	Active TSS	H1 Cell Line	embryonic stem cell
5	chr1:211035400-211035800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:211035400-211035800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:211035400-211035800	Active TSS	H9 Cell Line	embryonic stem cell
8	chr1:211035400-211035800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:211035400-211035800	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr1:211035400-211035800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:211035400-211035800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:211035400-211035800	Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr1:211035400-211035800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr1:211035400-211035800	Active TSS	Muscle Satellite Cultured Cells	--
15	chr1:211035400-211035800	Active TSS	Colonic Mucosa	Colon
16	chr1:211035400-211035800	Active TSS	Fetal Muscle Trunk	muscle
17	chr1:211035400-211035800	Active TSS	Fetal Muscle Leg	muscle
18	chr1:211035400-211035800	Active TSS	Fetal Stomach	stomach
19	chr1:211035400-211035800	Active TSS	Gastric	stomach
20	chr1:211035400-211035800	Active TSS	Left Ventricle	heart
21	chr1:211035400-211035800	Active TSS	Ovary	ovary
22	chr1:211035400-211035800	Active TSS	Psoas Muscle	Psoas
23	chr1:211035400-211035800	Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr1:211035400-211035800	Active TSS	Dnd41	blood
25	chr1:211035400-211035800	Active TSS	HepG2	liver
26	chr1:211035400-211035800	Active TSS	HMEC	breast
27	chr1:211035400-211036000	ZNF genes & repeats	HSMM	muscle

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