Variant report

Variant	rs61848972
Chromosome Location	chr1:211060761-211060762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1112600	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112999	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12401745	1.00[ASN][1000 genomes]
rs12404442	0.85[AMR][1000 genomes]
rs12406602	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1418972	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1539532	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17188617	0.85[AMR][1000 genomes]
rs17188623	0.85[AMR][1000 genomes]
rs17188665	1.00[ASN][1000 genomes]
rs17260816	0.85[AMR][1000 genomes]
rs17260830	0.85[AMR][1000 genomes]
rs17260837	0.89[AMR][1000 genomes]
rs3905343	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55717804	0.82[EUR][1000 genomes]
rs61827576	0.89[AMR][1000 genomes]
rs61827577	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61827580	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61827581	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61829494	0.85[AMR][1000 genomes]
rs61848965	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61848966	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61848967	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658648	1.00[ASN][1000 genomes]
rs6658652	1.00[ASN][1000 genomes]
rs6660844	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695591	1.00[ASN][1000 genomes]
rs72755509	1.00[ASN][1000 genomes]
rs7520827	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523746	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7552646	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv4398	chr1:211034582-211079117	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211056800-211078800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:211058400-211077400	Weak transcription	HSMMtube	muscle
3	chr1:211058600-211067200	Weak transcription	HSMM	muscle

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