Variant report

Variant	rs61848967
Chromosome Location	chr1:211045696-211045697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211045386..211048022-chr1:211050863..211053308,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1112600	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112999	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12401745	1.00[ASN][1000 genomes]
rs12404442	0.85[AMR][1000 genomes]
rs12406602	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1418972	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1539532	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17188617	0.85[AMR][1000 genomes]
rs17188623	0.85[AMR][1000 genomes]
rs17188665	1.00[ASN][1000 genomes]
rs17260816	0.85[AMR][1000 genomes]
rs17260830	0.85[AMR][1000 genomes]
rs17260837	0.89[AMR][1000 genomes]
rs3905343	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55717804	0.82[EUR][1000 genomes]
rs61827576	0.89[AMR][1000 genomes]
rs61827577	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61827580	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61827581	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61829494	0.85[AMR][1000 genomes]
rs61848965	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61848966	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61848972	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658648	1.00[ASN][1000 genomes]
rs6658652	1.00[ASN][1000 genomes]
rs6660844	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695591	1.00[ASN][1000 genomes]
rs72755509	1.00[ASN][1000 genomes]
rs7520827	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523746	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7552646	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv4398	chr1:211034582-211079117	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211024800-211046800	Weak transcription	HSMMtube	muscle
2	chr1:211036000-211054800	Weak transcription	HSMM	muscle

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