Variant report
| Variant | rs6660844 |
|---|---|
| Chromosome Location | chr1:211062180-211062181 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1112600 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1112999 | 0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12401745 | 1.00[ASN][1000 genomes] |
| rs12404442 | 0.83[AMR][1000 genomes] |
| rs12406602 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1418972 | 0.85[AMR][1000 genomes] |
| rs1539532 | 0.85[AMR][1000 genomes] |
| rs17188617 | 0.83[AMR][1000 genomes] |
| rs17188623 | 0.83[AMR][1000 genomes] |
| rs17188665 | 1.00[ASN][1000 genomes] |
| rs17260816 | 0.83[AMR][1000 genomes] |
| rs17260830 | 0.83[AMR][1000 genomes] |
| rs17260837 | 0.87[AMR][1000 genomes] |
| rs3905343 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55717804 | 0.81[EUR][1000 genomes] |
| rs61827576 | 0.87[AMR][1000 genomes] |
| rs61827577 | 0.87[AMR][1000 genomes] |
| rs61827580 | 0.87[AMR][1000 genomes] |
| rs61827581 | 0.87[AMR][1000 genomes] |
| rs61829494 | 0.83[AMR][1000 genomes] |
| rs61848965 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs61848966 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs61848967 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61848972 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6658648 | 1.00[ASN][1000 genomes] |
| rs6658652 | 1.00[ASN][1000 genomes] |
| rs6695591 | 1.00[ASN][1000 genomes] |
| rs72755509 | 1.00[ASN][1000 genomes] |
| rs7520827 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7523746 | 0.85[AMR][1000 genomes] |
| rs7552646 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832503 | chr1:210948760-211103163 | Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv4398 | chr1:211034582-211079117 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv873154 | chr1:211057697-211117197 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:211056800-211078800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 2 | chr1:211058400-211077400 | Weak transcription | HSMMtube | muscle |
| 3 | chr1:211058600-211067200 | Weak transcription | HSMM | muscle |
