Variant report

Variant	rs11119790
Chromosome Location	chr1:211845859-211845860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211834547..211836398-chr1:211845020..211846530,2	K562	blood:

Variant related genes	Relation type
ENSG00000224763	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1067244	0.81[JPT][hapmap]
rs12060511	1.00[MEX][hapmap]
rs12065353	1.00[MEX][hapmap]
rs12074029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12076396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12087109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12088971	0.89[EUR][1000 genomes]
rs2289725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28866869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3767376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs697003	0.93[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs701929	0.93[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11119790	FAM65B	trans	lymphoblastoid	seeQTL

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211827600-211847600	Weak transcription	HSMM	muscle
2	chr1:211827600-211847600	Weak transcription	NHEK	skin
3	chr1:211828600-211847600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:211828600-211847600	Weak transcription	Brain Germinal Matrix	brain
5	chr1:211828600-211847800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:211828600-211847800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:211828600-211848000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:211828600-211848000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:211828800-211847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:211829000-211847400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:211829000-211847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:211829600-211848600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:211832400-211847600	Weak transcription	Primary B cells from cord blood	blood
14	chr1:211833200-211847800	Weak transcription	Fetal Intestine Small	intestine
15	chr1:211833800-211847000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr1:211835200-211846400	Strong transcription	Fetal Thymus	thymus
17	chr1:211835400-211847400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:211836600-211846800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr1:211837200-211848000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr1:211837400-211848000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr1:211837600-211846800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:211837600-211847000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:211837600-211847600	Weak transcription	Fetal Kidney	kidney
24	chr1:211838400-211848000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:211841000-211846000	Strong transcription	K562	blood
26	chr1:211841000-211847600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr1:211841000-211848400	Weak transcription	Stomach Mucosa	stomach
28	chr1:211841400-211848200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr1:211841600-211848000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr1:211841800-211847000	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr1:211842000-211848400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr1:211843200-211847600	Weak transcription	Fetal Brain Female	brain
33	chr1:211843400-211846800	Weak transcription	Fetal Stomach	stomach
34	chr1:211843400-211847200	Weak transcription	Thymus	Thymus
35	chr1:211843400-211847800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:211843400-211848000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:211843400-211848000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:211843600-211847600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr1:211843600-211847600	Weak transcription	Fetal Lung	lung
40	chr1:211844200-211848400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr1:211844400-211846000	Weak transcription	Hela-S3	cervix
42	chr1:211844400-211848000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr1:211844400-211848000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr1:211844400-211848000	Weak transcription	NH-A	brain
45	chr1:211844400-211848200	Weak transcription	Fetal Intestine Large	intestine
46	chr1:211844600-211846000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr1:211844600-211846000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr1:211844600-211846000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr1:211844600-211846000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr1:211844600-211846200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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