Variant report

Variant	rs12076396
Chromosome Location	chr1:211855593-211855594
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1067244	0.82[ASN][1000 genomes]
rs1067245	0.82[ASN][1000 genomes]
rs11119790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12074029	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12087109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12088971	0.89[EUR][1000 genomes]
rs2289725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2305014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2305015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28767544	0.81[ASN][1000 genomes]
rs28866869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3767376	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs697003	0.80[ASN][1000 genomes]
rs701916	0.81[ASN][1000 genomes]
rs701929	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754845	chr1:211846605-211878605	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211850000-211856600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:211850000-211857200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:211850000-211857400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:211853400-211856400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:211853800-211855600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr1:211853800-211855600	Enhancers	HepG2	liver
7	chr1:211854400-211855600	Enhancers	Primary B cells from cord blood	blood
8	chr1:211854400-211856200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:211855200-211856200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:211855200-211860800	Weak transcription	GM12878-XiMat	blood
11	chr1:211855400-211860800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr1:211855400-211861400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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