Variant report

Variant	rs2289725
Chromosome Location	chr1:211843609-211843610
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1067244	0.81[JPT][hapmap]
rs11119790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060511	1.00[MEX][hapmap]
rs12065353	1.00[MEX][hapmap]
rs12074029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12076396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12087109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12088971	0.89[EUR][1000 genomes]
rs2305014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28866869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3767376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs697003	0.93[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs701929	0.93[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2289725	FAM65B	trans	lymphoblastoid	seeQTL

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211827600-211847600	Weak transcription	HSMM	muscle
2	chr1:211827600-211847600	Weak transcription	NHEK	skin
3	chr1:211828600-211845600	Weak transcription	Fetal Heart	heart
4	chr1:211828600-211847600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:211828600-211847600	Weak transcription	Brain Germinal Matrix	brain
6	chr1:211828600-211847800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:211828600-211847800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:211828600-211848000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:211828600-211848000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:211828800-211847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:211829000-211847400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:211829000-211847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:211829600-211848600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:211832400-211847600	Weak transcription	Primary B cells from cord blood	blood
15	chr1:211833200-211847800	Weak transcription	Fetal Intestine Small	intestine
16	chr1:211833600-211845800	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr1:211833800-211847000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr1:211835200-211846400	Strong transcription	Fetal Thymus	thymus
19	chr1:211835400-211844800	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr1:211835400-211845200	Strong transcription	Dnd41	blood
21	chr1:211835400-211847400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:211835800-211844600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:211835800-211844800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:211836000-211844600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr1:211836400-211845000	Strong transcription	A549	lung
26	chr1:211836600-211844800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:211836600-211846800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr1:211837200-211848000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr1:211837400-211844400	Strong transcription	Hela-S3	cervix
30	chr1:211837400-211848000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr1:211837600-211845200	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr1:211837600-211846800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:211837600-211847000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:211837600-211847600	Weak transcription	Fetal Kidney	kidney
35	chr1:211837800-211844400	Strong transcription	GM12878-XiMat	blood
36	chr1:211837800-211844800	Strong transcription	Osteobl	bone
37	chr1:211838000-211844800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr1:211838400-211848000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:211839400-211844600	Strong transcription	Primary hematopoietic stem cells	blood
40	chr1:211840000-211843800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr1:211840200-211844400	Strong transcription	Fetal Muscle Trunk	muscle
42	chr1:211840400-211844600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr1:211841000-211846000	Strong transcription	K562	blood
44	chr1:211841000-211847600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr1:211841000-211848400	Weak transcription	Stomach Mucosa	stomach
46	chr1:211841400-211845000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr1:211841400-211848200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr1:211841600-211844600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr1:211841600-211848000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr1:211841800-211844600	Strong transcription	Fetal Muscle Leg	muscle

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