Variant report

Variant	rs11119795
Chromosome Location	chr1:211879008-211879009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211877596..211879962-chr1:211887940..211890928,3	K562	blood:
2	chr1:211877072..211879946-chr1:211891385..211892885,2	K562	blood:
3	chr1:211874453..211877155-chr1:211877610..211880535,2	MCF-7	breast:
4	chr1:211878150..211879962-chr1:211887940..211889499,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1067244	0.81[JPT][hapmap]
rs11119790	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs11119796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11119801	1.00[AFR][1000 genomes]
rs11119803	1.00[AFR][1000 genomes]
rs12057678	1.00[AFR][1000 genomes]
rs12060511	1.00[MEX][hapmap]
rs12065353	1.00[MEX][hapmap]
rs12074029	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs12088971	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12090550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12096414	0.98[ASN][1000 genomes]
rs17017952	1.00[ASN][1000 genomes]
rs17017957	0.99[ASN][1000 genomes]
rs2289725	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs3767376	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs59220491	0.85[ASN][1000 genomes]
rs60075032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61672280	1.00[AFR][1000 genomes]
rs697003	0.81[JPT][hapmap]
rs701929	0.81[JPT][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211872800-211884000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:211876000-211880000	Enhancers	Fetal Muscle Trunk	muscle
3	chr1:211876400-211879400	Enhancers	Brain Substantia Nigra	brain
4	chr1:211876800-211879400	Enhancers	Brain Anterior Caudate	brain
5	chr1:211876800-211880400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:211877000-211880000	Enhancers	Fetal Muscle Leg	muscle
7	chr1:211877600-211879400	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:211877600-211880000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:211877800-211879400	Enhancers	Brain Hippocampus Middle	brain
10	chr1:211877800-211879400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr1:211877800-211880200	Enhancers	NHEK	skin
12	chr1:211878000-211880200	Enhancers	HMEC	breast
13	chr1:211878200-211879600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:211878200-211880000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:211878400-211880000	Enhancers	HSMMtube	muscle
16	chr1:211878600-211879400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:211878600-211880000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr1:211878800-211879200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:211878800-211879200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:211878800-211879200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:211878800-211879200	Enhancers	Brain Angular Gyrus	brain
22	chr1:211878800-211879200	Enhancers	Esophagus	oesophagus
23	chr1:211878800-211879200	Enhancers	Right Atrium	heart
24	chr1:211878800-211879200	Enhancers	A549	lung
25	chr1:211878800-211879200	Enhancers	HSMM	muscle
26	chr1:211878800-211879400	Enhancers	Spleen	Spleen
27	chr1:211878800-211879600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:211878800-211879600	Enhancers	Left Ventricle	heart
29	chr1:211879000-211879400	Enhancers	Placenta	Placenta
30	chr1:211879000-211879600	Enhancers	Skeletal Muscle Female	skeletal muscle

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