Variant report

Variant	rs11120462
Chromosome Location	chr1:215186044-215186045
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10494993	0.90[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10779633	0.85[CEU][hapmap]
rs10864143	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12041425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12046194	0.92[ASN][1000 genomes]
rs12131478	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1377173	0.85[CEU][hapmap]
rs1452607	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1452608	0.85[CEU][hapmap]
rs1452609	0.84[CEU][hapmap]
rs1452610	0.85[CEU][hapmap]
rs1452612	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1597847	0.85[CEU][hapmap]
rs2262937	0.85[CEU][hapmap]
rs2601607	0.82[CEU][hapmap]
rs2601609	0.85[CEU][hapmap]
rs2601610	0.85[CEU][hapmap]
rs2601612	0.85[CEU][hapmap]
rs2601613	0.85[CEU][hapmap]
rs2601614	0.85[CEU][hapmap]
rs2601618	0.85[CEU][hapmap]
rs2601621	0.85[CEU][hapmap]
rs2601624	0.85[CEU][hapmap]
rs2601625	0.85[CEU][hapmap]
rs2601636	0.85[CEU][hapmap]
rs2601638	0.85[CEU][hapmap]
rs2601640	0.85[CEU][hapmap]
rs2601641	0.85[CEU][hapmap]
rs2601646	0.85[CEU][hapmap]
rs2802643	0.85[CEU][hapmap]
rs2802644	0.85[CEU][hapmap]
rs2802649	0.85[CEU][hapmap]
rs2841597	0.85[CEU][hapmap]
rs2841598	0.85[CEU][hapmap]
rs2841599	0.85[CEU][hapmap]
rs2841604	0.85[CEU][hapmap]
rs2841606	0.85[CEU][hapmap]
rs2841607	0.85[CEU][hapmap]
rs2841608	0.85[CEU][hapmap]
rs2841609	0.88[CEU][hapmap]
rs2841611	0.85[CEU][hapmap]
rs2841612	0.85[CEU][hapmap]
rs2841613	0.85[CEU][hapmap]
rs34087768	0.97[ASN][1000 genomes]
rs34443503	0.91[ASN][1000 genomes]
rs4655387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4655388	0.85[ASN][1000 genomes]
rs7514693	0.97[ASN][1000 genomes]
rs7535449	0.97[ASN][1000 genomes]
rs7536850	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11120462	ESRRG	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215177200-215211200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:215182400-215188200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:215182600-215191600	Weak transcription	Osteobl	bone
4	chr1:215183400-215191600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215184000-215188000	Weak transcription	NHDF-Ad	bronchial

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