Variant report

Variant	rs11123057
Chromosome Location	chr2:125427366-125427367
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10183809	0.89[ASN][1000 genomes]
rs10202904	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10496638	0.90[CHB][hapmap]
rs11676516	0.89[ASN][1000 genomes]
rs11681479	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs11684957	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap]
rs11687803	0.89[ASN][1000 genomes]
rs12711689	0.90[CHB][hapmap]
rs12711690	0.90[CHB][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13026562	0.91[CHB][hapmap]
rs13386176	0.90[CHB][hapmap]
rs13392284	0.89[ASN][1000 genomes]
rs13399532	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs13413315	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs13415836	0.90[CHB][hapmap]
rs13432730	0.91[CHB][hapmap]
rs17011871	0.91[CHB][hapmap]
rs17011873	0.90[CHB][hapmap]
rs17011877	0.90[CHB][hapmap]
rs1869500	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1993274	0.85[YRI][hapmap]
rs34193160	0.89[ASN][1000 genomes]
rs34299668	0.89[ASN][1000 genomes]
rs35661599	0.89[ASN][1000 genomes]
rs35773922	0.89[ASN][1000 genomes]
rs36036896	0.89[ASN][1000 genomes]
rs4848258	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6541968	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap]
rs66814044	0.91[ASN][1000 genomes]
rs721520	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs7567761	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs7567777	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs7568564	0.90[CHB][hapmap]
rs7569075	0.91[CHB][hapmap]
rs7597429	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs7601415	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7603818	0.80[YRI][hapmap]
rs9677815	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv428727	chr2:125372897-125512949	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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