Variant report

Variant	rs10496638
Chromosome Location	chr2:125443155-125443156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10183809	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202904	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs11123057	0.90[CHB][hapmap]
rs11676516	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11681479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11684957	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs11687803	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12619819	0.88[YRI][hapmap]
rs12711689	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12711690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13022965	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs13026562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13033906	0.81[CHB][hapmap]
rs13385718	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs13386176	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13392284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13413315	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13415836	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13432730	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17011871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17011873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap]
rs17011877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17392772	0.88[YRI][hapmap]
rs1869500	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[ASN][1000 genomes]
rs34193160	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34299668	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35661599	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35773922	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36036896	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4848258	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4848965	0.81[CHB][hapmap]
rs6541968	1.00[CHB][hapmap]
rs66814044	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6710630	0.81[CHB][hapmap]
rs6739399	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs721520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7568564	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs7569075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7582697	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap]
rs7597429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601415	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[ASN][1000 genomes]
rs9677815	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv428727	chr2:125372897-125512949	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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