Variant report

Variant	rs13022965
Chromosome Location	chr2:125425589-125425590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10171962	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202904	0.81[CHB][hapmap]
rs10496638	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs11681479	0.81[CHB][hapmap];0.82[YRI][hapmap]
rs11684957	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs12619819	0.93[CEU][hapmap];0.83[JPT][hapmap]
rs12711689	0.82[YRI][hapmap]
rs13008849	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13026562	0.81[CHB][hapmap];0.83[YRI][hapmap]
rs13033906	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs13385718	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13386176	0.82[YRI][hapmap]
rs13399532	0.85[ASW][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.83[YRI][hapmap]
rs13413315	0.85[ASW][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.83[YRI][hapmap]
rs13432730	0.81[CHB][hapmap]
rs17011871	0.81[CHB][hapmap];0.83[YRI][hapmap]
rs17011873	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs17392772	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1869500	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs35658694	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4848254	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs4848258	0.81[CHB][hapmap]
rs4848963	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4848965	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4848966	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6541968	0.81[CHB][hapmap]
rs6710630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs6739399	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap]
rs721520	0.81[CHB][hapmap]
rs7567761	0.81[CHB][hapmap];0.82[YRI][hapmap]
rs7567777	0.81[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.82[YRI][hapmap]
rs7568564	0.85[ASW][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.83[YRI][hapmap]
rs7569075	0.81[CHB][hapmap];0.83[YRI][hapmap]
rs7582697	0.92[ASW][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];0.83[YRI][hapmap]
rs7596874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7597429	0.81[YRI][hapmap]
rs7601415	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs936027	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv428727	chr2:125372897-125512949	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125421600-125425600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:125424800-125425800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:125425000-125426000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:125425400-125426600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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