Variant report
| Variant | rs4848254 |
|---|---|
| Chromosome Location | chr2:125390176-125390177 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:44)
| rs_ID | r2[population] |
|---|---|
| rs10184472 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10207721 | 0.89[ASN][1000 genomes] |
| rs12470814 | 0.90[ASN][1000 genomes] |
| rs12473998 | 0.90[ASN][1000 genomes] |
| rs13003103 | 0.87[ASN][1000 genomes] |
| rs13011609 | 1.00[ASN][1000 genomes] |
| rs13022965 | 0.90[CHB][hapmap];0.88[JPT][hapmap] |
| rs13033906 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
| rs13385718 | 0.90[CHB][hapmap];0.88[JPT][hapmap] |
| rs1504015 | 0.91[ASN][1000 genomes] |
| rs1504023 | 1.00[ASN][1000 genomes] |
| rs1587788 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1587789 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17392772 | 1.00[CHB][hapmap];0.88[JPT][hapmap] |
| rs2219107 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4848249 | 1.00[YRI][hapmap] |
| rs4848250 | 1.00[YRI][hapmap] |
| rs4848257 | 0.88[ASN][1000 genomes] |
| rs4848949 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4848959 | 0.98[ASN][1000 genomes] |
| rs4848960 | 0.97[ASN][1000 genomes] |
| rs4848965 | 0.91[CHB][hapmap];0.88[JPT][hapmap] |
| rs6707412 | 0.97[ASN][1000 genomes] |
| rs6710630 | 0.91[CHB][hapmap];0.87[JPT][hapmap] |
| rs6712020 | 0.88[ASN][1000 genomes] |
| rs6720324 | 0.97[ASN][1000 genomes] |
| rs6721614 | 0.90[ASN][1000 genomes] |
| rs6739399 | 0.90[CHB][hapmap];0.88[JPT][hapmap] |
| rs6743015 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6745271 | 0.97[ASN][1000 genomes] |
| rs6750530 | 0.90[ASN][1000 genomes] |
| rs727179 | 0.97[ASN][1000 genomes] |
| rs727180 | 0.97[ASN][1000 genomes] |
| rs7560341 | 0.98[ASN][1000 genomes] |
| rs7564755 | 0.98[ASN][1000 genomes] |
| rs7596874 | 0.90[CHB][hapmap];0.88[JPT][hapmap] |
| rs7599787 | 1.00[YRI][hapmap] |
| rs7605511 | 0.97[ASN][1000 genomes] |
| rs924802 | 0.97[ASN][1000 genomes] |
| rs936028 | 0.90[ASN][1000 genomes] |
| rs936029 | 0.90[ASN][1000 genomes] |
| rs963189 | 1.00[YRI][hapmap] |
| rs9646915 | 0.98[ASN][1000 genomes] |
| rs9646916 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834357 | chr2:125258157-125421507 | Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv834359 | chr2:125367872-125536022 | Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv428727 | chr2:125372897-125512949 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
