Variant report

Variant	rs17392772
Chromosome Location	chr2:125407986-125407987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10171962	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10496638	0.88[YRI][hapmap]
rs12619819	0.93[CEU][hapmap];0.83[JPT][hapmap]
rs13008849	0.85[EUR][1000 genomes]
rs13022965	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13033906	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs13385718	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35658694	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4848254	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4848963	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4848965	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6710630	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6739399	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7596874	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs936027	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv428727	chr2:125372897-125512949	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv979295	chr2:125406438-125414016	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125405600-125410600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:125407800-125408000	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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